Bacteria under SOS evolve anticancer phenotypes

Abstract

Background

The anticancer drugs, such as DNA replication inhibitors, stimulate bacterial adhesion and induce the bacterial SOS response. As a variety of bacterial mutants can be generated during SOS, novel phenotypes are likely to be selected under the drug pressure.

Presentation of the hypothesis

Bacteria growing with cancer cells in the presence of the replication inhibitors undergo the SOS response and evolve advantageous phenotypes for the bacteria to invade the cancer cells in order to evade the drug attack. This hypothesis predicts that bacteria produce the proteins that mediate bacterial capture and invasion of cancer cells--the advantageous phenotypes. Generation of the phenotypes may be facilitated during the SOS response induced by anticancer drugs.

Testing the hypothesis

Experimental design: 1) Examine attachment and invasion of bacterium Pseudomonas aeruginosa and the SOS mutant control to cancer cells in the presence of the anticancer drugs that inhibit DNA replication enzymes and trigger the SOS response. 2) Reveal the bacterial proteins that exhibit changes in expression. 3) Identify the genes encoding cancer adhesion and invasion. 4) Construct the mutants for the genes, clone and express these genes. 5) Examine the bacterial capture and invasion of cancer cells in contrast to non-cancer control.

Expected results: 1) The bacterial proteins will be differentially induced during bacteria-cancer interaction under the SOS response to the anticancer drugs. 2) Knocking out the bacterial cancer-adhesion-invasion genes will disrupt the adhesion-invasion phenotypes of the bacteria. 3) Expressing these genes will direct the bacterial capture and invasion of cancer cells.

Implications of the hypothesis

Bacteria can evolve anticancer phenotypes targeting metastatic cells. If this hypothesis is true, the outcomes will contribute to development of a novel bacterial anti-metastasis regimen.

Background

Attempts with live bacteria to control cancer progression were tried over a century ago [1, 2]. Although undesired infections raised a concern, creative hypotheses and progress have sparkled. As reviewed by Chakrabarty [3], antitumor treatment with Clostridium novyi was proposed, based on propensity of the anaerobe to grow in anaerobic core of the tumors and to deprive tumors of oxygen and essential nutrients. Salmonella, a facultative anaerobe, was also found to have tumor propensity that appears to be encoded by the pathogenicity island. Furthermore, bacteria could be engineered for selective destruction of tumors and for bacterial gene-directed prodrug therapy; in fact, such bacteria appeared to kill tumors selectively but not the normal tissue [4]. While these data support the notion of bacterial tropism and cancer killing, it remains unclear how they are developed and what evolutionary relationship of bacteria is with cancer.

We previously proposed the analogy of bacterial lifestyle to cancer cell behaviors, projecting the evolutionary relationship [5, 6]. The shared features are reflected by observations that bacteria and cancer cells respond similarly to such anticancer drugs as DNA replication inhibitors [5]. These common lifestyles imply that they may compete with each other under certain conditions [5, 6]. Bacteria growing under competition and drug influence are highly likely to evolve new phenotypes against cancer.

Replication inhibitors also induce the SOS response [7] during which generation of new phenotype may be facilitated. SOS is a transcriptional response, in which at least 40 SOS genes in E. coli[8–10] and 15 in P. aeruginosa[11] are induced through interplay of the SOS regulators LexA and RecA (Fig. 1). In the presence of single-stranded DNAs that are generated during replication inhibition, RecA coprotease senses the signals and binds to the single-stranded DNA to assume an active conformation [12] and to stimulate auto-cleavage of LexA [13]. Consequently, LexA repression of the SOS genes is prevented by this cleavage leading to a global induction of the SOS response.

Figure 1

The SOS response. LexA and RecA control the SOS genes that encode functions required for DNA damage repair. LexA represses these genes. DNA damage activates RecA to stimulate autocatalytic cleavage of LexA so that the SOS genes are derepressed and expressed for repair. Cell division is inhibited and delayed resulting filamentation to allow repair before cell division.

These SOS gene products are involved in cytogenesis, DNA recombination, DNA replication, DNA damage repair, and segregation of chromosomes during cell division [14, 15]. For instance, the SOS gene, sulA, is induced to inhibit and delay cell division transiently leading to cell filamentation (Fig. 1) until DNA damage is ameliorated. The SOS-controlled umu operon is involved in the error-prone translesion DNA synthesis [16]. If damage is so extensive that it cannot be directly repaired, the lesions of damage can be bypassed by the translesion synthesis with aid of the umu encoded proteins [17], leading to mutagenesis and genetic instability. A variety of bacterial mutants can be generated consequently. If bacteria grow with cancer and anticancer drugs, pools of these bacterial mutants are, in fact, selected for new phenotypes (Fig. 2).

Figure 2

The hypothesis of bacterial cancer capture-invasion phenotypes. The bacterial SOS response is triggered by DNA damage caused by treatment with replication inhibition anticancer drugs. If damage is so extensive that the cells cannot directly repair, the lesions of damage can be bypassed, leading to mutagenesis and genetic instability. A variety of bacterial mutants can be generated consequently and selected for adhesion to cancer cells and invade them to evade the drug attack. The mutants produce proteins (triangles) that recognize the cancer cells surface (double triangles) and mediate bacterial adhesion to the cancer cells.

This article aims to present a creative hypothesis as below. This hypothesis predicts that bacteria can evolve the cancer adhesion-invasion phenotypes, to challenge the limitation of anticancer treatment arising from bacterial natural propensity to cancer. The outcomes should help develop novel bacterial anticancer regimens to deal with the safety and specificity issues poised over a century ago.

Presentation of the hypothesis

Our hypothesis states that bacteria, growing with cancer cells and replication inhibition drugs, evolve advantageous phenotypes. This hypothesis suggests that treated with the drugs, bacteria can be induced to adhere to and to invade cancer cells so that bacteria survive the drug attack. These features are defined as the cancer adhesion-invasion phenotypes. Obviously, our hypothesis is not based on the bacterial natural antitumor propensity but on the SOS-induced molecular evolution of new phenotypes. This hypothesis will be tested with P. aeruginosa as a starter. While its ecological niche may not be necessarily tumor, this bacterium could attach to and penetrated human lung epithelial cells derived from a human bronchus alveolar carcinoma [18]. These antitumor activities may be mediated by bacterial proteins; in fact, P. aeruginosa does have such an antitumor potential since it has genes encoding antitumor proteins. Azurin is a periplasmic antitumor protein in P. aeruginosa (reviewed in [19]). Release of Azurin depends on contact with cancer cells, and Azurin targets preferentially cancer cells but marginally normal cells [20]. Additionally, Laz and Pa-CARD displays cytotoxic activity against leukemia cells [21]. Our hypothesis suggests that such proteins and new candidates would emerge when bacteria undergoing the anticancer drugs-induced SOS mutagenesis interact with cancer cells.

Furthermore, bacterial adhesion to cancer may be induced as we proposed previously [6]. P. aeruginosa can be induced to attach to abiotic surface and can form biofilms in response to hydroxyurea [5, 22]. While historically it is an antiproliferative drug for tumor treatment [5, 22], hydroxyurea is a replication inhibitor targeting at ribonucleotide reductases that are a good anticancer target [23]. This drug inhibits growth of proliferating planktonic bacterial cells but stimulates bacterial adhesion [5, 22], likely to cancer. Such replication inhibitors induce the bacterial SOS response (Fig. 1) [7] during which generation of the advantageous phenotypes may be facilitated (Fig. 2). For instance, error prone DNA replication generates mutagenesis and genetic instability during SOS, yielding a variety of bacterial mutants. Since bacterial entry into cancer cells can evade the drug attack, these mutants can be selected for cancer invasion for bacterial survival.

Testing the hypothesis

Experimental design

To test this hypothesis, we will first examine attachment of P. aeruginosa to cancer cells and cancer invasion (Fig. 3). We will use the recA mutant as a bacterial SOS control because RecA initiates SOS that may facilitate development of the adhesion-invasion phenotypes. We will incubate these bacterial cells with cancer cells in the presence of the anticancer drugs that inhibit DNA replication enzymes including DNA polymerases [24], DNA helicases [25], ribonucleotide reductases [23], and topoisomerases [26]. We will harvest the invaded bacteria from the cancer cells. Second, we will use proteomic analysis to reveal proteins that exhibit distinct changes in expression in the bacterial cells that adhere to and invade into cancer cells. Lastly, according to the proteomic results, we will identify the mutated genes encoding cancer adhesion and invasion. We will construct the deletion mutants by deletion-insertion of the genes encoding the induced proteins. We will test the mutants for cancer adhesion and invasion. We will over-produce these proteins and examine adhesion-invasion phenotypes against the cancer cells and the non-cancer control.

Figure 3

Experimental design. 1) Examine bacterial attachment to and invasion into cancer cells in the presence of the anticancer drug that induces the SOS response. 2) Use proteomic analysis to reveal the bacterial proteins that exhibit changes in expression. 3) Identify the genes encoding cancer adhesion and invasion. 4) Construct the mutants for the genes, clone and express these genes. And 5) examine the bacterial capture and invasion of cancer cells in contrast to non-cancer control.

Bacterial proteins differentially induced during bacteria-cancer interaction

Bacteria under the anticancer drug-induced SOS are expected to produce proteins that mediate the cancer adhesion-invasion phenotypes (Figs. 2 and 3). The protein induction is generally reflected by alterations in the intensities of the 2-D gel protein spots from the invaded and non-invaded bacteria, with reference to the SOS controls. Interacting with cancer cells, the bacteria are likely to evolve a pattern of surface proteins suitable for bacterial adhesion to and invasion of cancer cells (Fig. 2). The pattern is likely to be unique to the cancer adhesion-invasion phenotypes as compared with that of the SOS and non-invaded controls. These proteins are expected to be deficient in the recA mutant, in which SOS is precluded. They are unlikely to appear on the non-invaded bacterial control.

Identification of bacterial genes encoding cancer adhesion and invasion

It is plausible that knocking out the bacterial cancer-adhesion-invasion genes would disrupt the adhesion-invasion phenotypes. If the proteomic analysis indicates increases in the levels of the proteins from the bacteria with the adhesion-invasion phenotypes, mutations with inactivation of the genes encoding these proteins will render the mutant bacteria unable to attach to and invade the cancer cells. However, over-production of these proteins is expected to enhance bacterial capture and invasion of the cancer cells but not the non-cancer control. Then, it can be concluded that these genes are required for the cancer adhesion-invasion phenotypes.

Collectively, the high resolution of the 2-D based proteomic approach will allow us to identify the patterns of the cancer-inducible surface proteins on bacteria so that the encoding genes can be identified. These genes can be cloned and expressed in non-pathogenic bacteria that are safe to the hosts but selectively lethal to cancer cells.

Implications of the hypothesis

Our hypothesis regarding evolution of bacterial anticancer phenotypes implies that bacteria can evolve cancer cell-specific phenotypes when growing with cancer cells of certain types, for instance, the metastatic cells. Metastasis is a process in which cancer cells migrate to distant sites and adapt to the tissue microenvironment from the primary cancer and thus becomes the major cause of deaths in cancer patients. While metastasis can be impaired by the antagonist bacterial biofilms [6] or by the bacterial proteins [19–21] during treatment with the anticancer drugs as proposed previously [6], the underlying mechanism for bacterial recognition or tropism for cancer cells is not fully understood and thus addressed by this hypothesis. As bacterial tropism is still in its infancy, if this hypothesis is true, the outcomes may stimulate future research interest into development and evolution of the bacterial tropism for cancer cells, contributing to formulating novel bacterial anti-metastasis regimens.

Authors' informations

Dr. Weitao who currently holds a faculty position at the University of Texas at San Antonio is an expert in areas of microbiology and molecular biology. Dr. Dallo is an expert in microbiology and immunology in Dr. Weitao's group. This group is interested in breaking ground, creating new hypotheses and theories to tackle the unbeatable challenges, such as cancer.