Table 2 Taxonomic assignments of the 18 OTUs present in 95% of samples (n = 20) that underwent sequencing of the V4 hypervariable region of the 16S rRNA gene and their relative abundance
From: Characterisation of microbial communities within aggressive prostate cancer tissues
Core OTUs shared by 95% of samples | Relative abundance of OTU within the total community |
|---|---|
% | |
k_Bacteria; p_Proteobacteria; c_Gammaproteobacteria; o_Enterobacteriales; f_Enterobacteriaceae; g_; s_ | 70.1% |
k_Bacteria; p_Proteobacteria; c_Gammaproteobacteria; o_Enterobacteriales; f_Enterobacteriaceae; g_Escherichia; s_ | 6.9% |
k_Bacteria; p_Proteobacteria; c_Betaproteobacteria; o_Burkholderiales; f_Oxalobacteraceae; g_Ralstonia; s_ | 1.7% |
k_Bacteria; p_Proteobacteria; c_Gammaproteobacteria; o_Pseudomonadales; f_Pseudomonadaceae; g_Pseudomonas; s_ | 1.3% |
k_Bacteria; p_Actinobacteria; c_Actinobacteria; o_Actinomycetales; f_Corynebacteriaceae; g_Corynebacterium; s_ | 0.8% |
k_Bacteria; p_Proteobacteria; c_Betaproteobacteria; o_Burkholderiales; f_Comamonadaceae; g_Curvibacter; s_ | 0.7% |
k_Bacteria; p_Proteobacteria; c_Alphaproteobacteria; o_Caulobacterales; f_Caulobacteraceae; g_; s_ | 0.7% |
k_Bacteria; p_Firmicutes; c_Bacilli; o_Lactobacillales; f_Aerococcaceae; g_Aerococcus; s_ | 0.6% |
k_Bacteria; p_Firmicutes; c_Bacilli; o_Bacillales; f_Staphylococcaceae; g_Staphylococcus; s_ | 0.4% |
k_Bacteria; p_Actinobacteria; c_Actinobacteria; o_Actinomycetales; f_Microbacteriaceae; g_; s_ | 0.4% |
k_Bacteria; p_Firmicutes; c_Bacilli; o_Bacillales; f_Staphylococcaceae; g_; s_ | 0.3% |
k_Bacteria; p_Proteobacteria; c_Gammaproteobacteria; o_Enterobacteriales; f_Enterobacteriaceae; g_Enterobacter; s_hormaechei | 0.3% |
k_Bacteria; p_Proteobacteria; c_Gammaproteobacteria; o_Pseudomonadales; f_Moraxellaceae; g_; s_ | 0.2% |
k_Bacteria; p_Proteobacteria; c_Gammaproteobacteria; o_Enterobacteriales; f_Enterobacteriaceae; g_Plesiomonas; s_ | 0.1% |
k_Bacteria; p_Firmicutes; c_Bacilli; o_Lactobacillales; f_Streptococcaceae; g_Streptococcus; s_ | 0.1% |
k_Bacteria; p_Proteobacteria; c_Gammaproteobacteria; o_Enterobacteriales; f_Enterobacteriaceae; g_Erwinia; s_ | <0.1% |
k_Bacteria; p_Proteobacteria; c_Gammaproteobacteria; o_Enterobacteriales; f_Enterobacteriaceae; g_Serratia; s_marcescens | <0.1% |
k_Bacteria; p_Proteobacteria; c_Gammaproteobacteria; o_Pseudomonadales; f_Moraxellaceae; g_Moraxella; s_ | <0.1% |
Sum of “core” OTUs (across 95% of samples) | 84.6% |