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Table 1 Primers for HPV16 detection, amplification and sequencing

From: Variants of human papillomaviruses 16 (HPV16) in Uigur women in Xinjiang, China

 

Primer name

Primer sequence

Gene area covered (bp)

HPV16 detection

pHPV16 E6-F

5′-GACCCAGAAAGTTACCACAG-3′

146-374

 

pHPV16 E6-R

5′-CACAACGGTTTGTTGTATTG-3′

 

E6/E7

16E6-15 N

5′-AAACTAAGGGCGTAACCGAAATC-3′

44-910

 

16E7-16C

5′-CAGCCTCTACATAAAACCATCCAT-3′

 
 

16E6-13 N

5′-AACCGAAATCGGTTGAACCG-3′

60-857

 

16E7-13C

5′-TGCAGGATCAGCCATGGTAGAT-3′

 
 

MY11-N

5′-GCMCAGGGWCATAAYAATGG-3′

6602-7013

L1

MY09-C

5′-CGTCCMARRGGAWACTGATC-3′

 
 

GP-N

5′-CTGTGGTWGATACYACWCGCAGTAC-3′

6656-7013

  1. F forward primer, R reverse primer, N normal strand, C complementary strand. Degenerate primers used : M = A/C; R = A/G; W = A/T; Y = C/T