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Table 4 Primer sequences for microRNA methylation analysis

From: HIV-1 Tat induces DNMT over-expression through microRNA dysregulation in HIV-related non Hodgkin lymphomas

microRNA

Primer sequence

hsa-miR148a FORWARD (BSP)

5’-TGGGTATTTGTTTTTGTTGATTG-3’

hsa-miR148a REVERSE (BSP)

5’ACTACACTTAAACCCCCTCTAACC-3’

hsa-miR152 FORWARD (BSP)

5’-GGAATTTTGTGTTATTTTTGATTG-3’

hsa-miR152 REVERSE (BSP)

5’CCAAACAAATATTCCACTACAAAC-3’

hsa-miR148a U-FORWARD (MSP)

5’TTGATGTTGTTAGTGTTTTAGATGT-3’

hsa-miR148a U-REVERSE (MSP)

5’AAAAAAATTAATCAAATTCCTCATA-3’

hsa-miR148a M-FORWARD (MSP)

5’GTCGATGTCGTTAGTGTTTTAGAC-3’

hsa-miR148a M-REVERSE (MSP)

5’AAAAAAATTAATCAAATTCCTCGTA-3’

  1. hsa-miR148a hsa-miR148a (BSP) amplify a region of 326 bp; hsa-miR152 (BSP) amplify a region of 435 bp. Appropriate primers for MSP were found by the software only for hsa-miR148a, which amplify a region of 110 bp.