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Table 4 Variants of Human papillomavirus types 16, 52 and 58 in immigrant women

From: Prevalence of human papillomavirus genotypes and their variants in high risk West Africa women immigrants in South Italy

HPV16

6

6

9

5

6

7

2

1

6

8

0

3

6

8

5

3

6

8

6

2

6

8

6

5

6

9

7

0

6

9

9

4

7

0

6

0

Class

Country of origin

Reference (NC001526)

A

G

A

C

T

C

C

G

G

E

Germany

DF-23 a

-

-

-

-

-

-

-

-

-

E

Nigeria

DF-124

C

A

-

T

-

T

T

A

T

Af2

Nigeria

Z-1194

C

A

-

T

-

T

T

A

T

Af2

Zaire

HPV52

6

7

0

1

6

7

0

3

6

7

1

1

6

7

1

2

6

7

6

4

6

7

9

4

6

8

2

4

6

9

1

7

6

9

2

0

6

9

3

5

6

9

4

1

Country of origin

Reference (X74481)

T

A

A

G

T

A

C

C

T

T

A

United States

DF-32

-

C

G

A

-

-

-

A

G

A

G

Uruguay

IS464 (U45923)

-

C

G

A

-

-

-

A

G

A

G

Panama

BR0258 (DQ057320)

-

C

G

A

-

-

-

A

G

A

G

Brazil

HK1151 (DQ057317)

A

-

-

-

C

G

T

A

G

A

G

China

HPV58

6

6

4

1

6

6

8

8

6

6

9

2

6

6

9

6

6

6

9

7

6

7

1

1

6

7

9

8

6

8

2

2

6

8

2

7

6

8

2

8

7

0

1

6

Country of origin

Reference (D90400)

G

C

G

G

G

G

A

G

C

A

A

Japan

DF-19

-

A

-

-

-

-

G

A

A

G

-

Ethiopia

Bsb-02 (AY101598)

-

A

-

-

-

-

G

A

A

G

-

Brazil

IS404 (U45928)

-

-

-

-

-

-

G

A

A

G

-

Mali

DF-03 a

-

-

A

A

-

A

G

A

A

G

-

Nigeria

DF-09

-

-

A

-

A

A

G

A

A

G

G

Nigeria

IS417 (U45929)

-

-

A

-

A

A

G

A

A

G

G

Mali

Bsb-08 (AY098920)

-

-

A

-

A

A

G

A

A

G

G

Brazil

  1. Nucleotide positions, written vertically across the top, refer to nucleotide changes detected within MY09/MY11 L1 regions of HPV16, 52 and 58. Absence of genetic variations relative to the reference HPV type are marked with dashes, whereas presence of variant nucleotides are indicated by the nucleotide corresponding letter. Within each panel, the first column lists the variants identified in the present study (DF-09; DF-19; DF-23; DF-32; DF-124) and those previously described (Bsb-02 and Bsb-08 [44]; IS404, IS417 and IS464 [42]; BR0258 and HK1151 [26]; Z-1194 [59]) with the GeneBank accession number given in parenthesis.
  2. aHPV variants identified in samples with multiple infections by subcloning of MY09/MY11 PCR-products and sequencing analyses.
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Infectious Agents and Cancer

ISSN: 1750-9378

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