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Table 1 Primers used for the molecular characterization of fourteen human papillomavirus E6 and E7 genes

From: Phylogeny and polymorphism in the E6 and E7 of human papillomavirus: alpha-9 (HPV16, 31, 33, 52, 58), alpha-5 (HPV51), alpha-6 (HPV53, 66), alpha-7 (HPV18, 39, 59, 68) and alpha-10 (HPV6, 44) in women from Shanghai

HPV genotype

Reference sequence ID

Gene

Direction

Sequence 5′-3’

Primer position

Product size, bp

Annealing Temperature, °C

6

KU298876.1

E6, E7

Forward

AGGGACCGAAAACGGTTCAA

32

1079

58

Reverse

CTAACATATGGACTACCTAAAT

1110

  

16

NC_001526

E6

Forward

ACCGTTTTGGGTTACACATTTAC

6996

700

60

Reverse

CTGTCATTTAATTGCTCATAACAGTAGA

7695

  

E7

Forward

CATTAGAACAGCAATACAACAAACC

7405

579

60

Reverse

TCCACTACAGCCTCTACATAAAACC

7983

  

18

NC_001526

E6, E7

Forward

CATGTCCAACATTCTGTCTACCC

7751

1064

58

Reverse

TTACAACCCGTGCCCTCC

957

  

31

J04353.1

E6, E7

Forward

AGTAGGGAGTGACCGAAAGTGG

27

959

58

Reverse

CACTACTGTCTTCATTTTCGTCCTC

985

  

33

M12732.1

E6, E7

Forward

AACTATGCCTTGTAAAAGTGAGTCAC

7813

1116

58

Reverse

TAAATCCGTGCCACTGTCATC

1015

  

39

M62849.1

E6, E7

Forward

AAGGGAGTAACCGAAAACGG

34

1096

58

Reverse

CCTGTGCTGTCTCACGCTCT

1129

  

44

U31788.1

E6, E7

Forward

ATCGGTTGACACACACCCTG

7796

1083

58

Reverse

CATCCGCCTCCTGTCGTTTAACAA

1045

  

51

KU298901.1

E6, E7

Forward

ACTAGGGTGTAACCGAAAAGGG

17

965

58

Reverse

TCATCCTCATCATCCGAAACAT

981

  

52

NC_001592.1

E6

Forward

ACCGTACCCACAACCACTTTT

7929

738

58

Reverse

TTGTGGCTTGTTCTGCTTGTC

706

  

E7

Forward

AACGCCATTATGTCCTGAAGAA

422

554

58

Reverse

CATCCTCGTCCTCTGAAATGTTAT

975

  

53

GQ472849.1

E6, E7

Forward

AGACAGGGAGTAACCGAAATAGG

24

988

58

Reverse

GCTTTCCTCGTCTGTTTCATCTT

1011

  

58

D90400

E6

Forward

CGTTTTGGGTCACATTGTTCA

7782

702

58

Reverse

CATAATTGCTCATAGCAGAATAGGTC

659

  

E7

Forward

TTCGCTATATGGAGACACATTAGAA

352

613

58

Reverse

TTCTTCGTTCTATTACCGCTTCTA

964

  

59

X77858.1

E6, E7

Forward

AAGCAACCGAAAAAGGTCGG

7805

1128

58

Reverse

TGTGGTATCATCAATAAAATCTACC

1036

  

66

U31794.1

E6, E7

Forward

TTGGGAGTAACCGAAATGGG

27

992

58

Reverse

CATTCTCCTCCTCGCTTTCAT

1018

  

68

DQ080079

E6, E7

Forward

CCGAAAAAGGTTGGGCACAC

7682

1098

58

Reverse

TGAACCTGTATCTGTTGCGTT

958

  
  1. HPV Human papillomavirus