Table 2 Frequency of group 1, 2A, 2B, 3 and unclassified HPV genotypes among NILM, low grade SIL and high grade SIL
From: Prevalence of “unclassified” HPV genotypes among women with abnormal cytology
Species | HPV genotypea | All samples n = 337 (%) | NILM n = 96 (%) | LSIL n = 226 (%) | HSIL n = 15 (%) |
|---|---|---|---|---|---|
HPV Negative | 107 (31.8) | 61 (63.5) | 45 (20.0) | 1 (6.7) | |
HPV Positive | 230 (68.3) | 35 (36.5) | 181 (80.0) | 14 (93.3) | |
Group 1 | |||||
A9 | HPV16 | 40 (11.9) | 5 (5.2) | 30 (13.3) | 5 (33.3) |
A7 | HPV18 | 13 (3.9) | 2 (2.1) | 10 (4.4) | 1 (6.7) |
A9 | HPV31 | 18 (5.3) | 0 | 17 (7.5) | 1 (6.7) |
A9 | HPV33 | 11 (3.3) | 1 (1.0) | 9 (3.9) | 1 (6.7) |
A9 | HPV35 | 2 (0.6) | 0 | 1 (0.4) | 1 (6.7) |
A7 | HPV39 | 7 (2.1) | 1 (1.0) | 5 (2.2) | 1 (6.7) |
A7 | HPV45 | 7 (2.1) | 0 | 7 (3.1) | 0 |
A5 | HPV51 | 6 (1.8) | 0 | 5 (2.2) | 1 (6.7) |
A9 | HPV52 | 10 (3.0) | 4 (4.2) | 6 (2.7) | 0 |
A6 | HPV56 | 10 (3.0) | 3 (3.1) | 5 (2.2) | 2 (13.3) |
A9 | HPV58 | 8 (2.4) | 3 (3.1) | 5 (2.2) | 0 |
A7 | HPV59 | 7 (2.1) | 2 (2.1) | 5 (2.2) | 0 |
Total Group 1 | 139 (41.3) | 21 (21.9) | 105 (46.5) | 13 (86.7) | |
Group 2A | |||||
A7 | HPV68 | 3 (0.9) | 1 (1.0) | 2 (0.8) | 0 |
Group 2B | |||||
A6 | HPV53 | 22 (6.5) | 2 (2.1) | 19 (8.4) | 1 (7.1) |
A6 | HPV66 | 21 (6.2) | 1 (1.0) | 17 (7.5) | 3 (21.4) |
A9 | HPV67 | 3 (0.9) | 0 | 3 (1.3) | 0 |
A7 | HPV70 | 5 (1.5) | 0 | 5 (2.2) | 0 |
A11 | HPV73 | 2 0.6) | 0 | 2 (0.9) | 0 |
A5 | HPV82 | 2 (0.6) | 1 (1.0) | 1 (0.4) | 0 |
A11 | HPV34 | 1 (0.3) | 0 | 1 (0.4) | 0 |
A7 | HPV85 | 1 (0.3) | 0 | 1 (0.4) | 0 |
Total Group 2B | 57 (16.9) | 4 (4.2) | 49 (21.7) | 4 (26.7) | |
Group 3 | |||||
A10 | HPV6 | 8 (2.4) | 2 (2.1) | 6 (2.7) | 0 |
A10 | HPV11 | 1 (0.3) | 0 | 1 (0.4) | 0 |
Total Group 3 | 9 (2.7) | 2 (2.1) | 7 (3.1) | 0 | |
Unclassified | |||||
A3 | HPV81 | 7 (2.1) | 1 (1.0) | 6 (2.7) | 0 |
A1 | HPV42 | 5 (1.5) | 0 | 5 (2.2) | 0 |
A3 | HPV62 | 6 (1.8) | 1 (1.0) | 5 (2.2) | 0 |
A10 | HPV55 | 4 (1.2) | 1 (1.0) | 3 (1.3) | 0 |
A3 | HPV89 | 4 (1.2) | 3 (3.1) | 1 (0.4) | 0 |
A8 | HPV91 | 4 (1.2) | 0 | 4 (1.8) | 0 |
A13 | HPV54 | 3 (0.9) | 0 | 3 (1.3) | 0 |
A14 | HPV90 | 3 (0.9) | 1 (1.0) | 2 (0.9) | 0 |
A3 | HPV84 | 2 (0.6) | 1 (1.0) | 1 (0.4) | 0 |
A3 | HPV61 | 1 (0.3) | 0 | 1 (0.4) | 0 |
A3 | HPV83 | 1 (0.3) | 0 | 1 (0.4) | 0 |
B1 | HPV12 | 1 (0.3) | 0 | 1 (0.4) | 0 |
Total Unclassified | 41 (12.2) | 8 (8.3) | 33 (14.6) | 0 | |