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Table 3 HPV DNA identification in the TCGA series of prostate cancers

From: High risk human papilloma viruses (HPVs) are present in benign prostate tissues before development of HPV associated prostate cancer

Sample ID HPV type E6 E7 E1 E2 E4 E5 L2 L1 Confidence
df64c493-d290-41c7-abd3-ab65cda57b02 16 8 12 5 37 24 16 2 0 High
5faf8ec8-f94c-4b0c-9d91-70942f15f3c8 16 3 5 8 50 28 14 0 0 High
b13d4e3d-898e-4339-a506-110b8e803b6e 16 6 9 1 18 10 5 0 0 High
2d8b33e3-002b-4592-9bc3-b3eab242c893 16 0 3 4 14 10 8 0 0 High
627b9ff8–2557-4470-824a-b76a8bcd1e9f 16 8 12 1 0 0 0 0 6 High
3ea3bcfc-2030-4d0b-b9b2-840a9ad1acaf 16 1 3 2 7 5 6 0 0 High
bccb7f9d-8dde-45b7-a50d-6c7233239ceb 18 3 4 12 0 0 0 0 0 High
7413d045-cedb-4ec6-95ea-6f7b676f800d 16 0 0 0 11 6 7 0 0 High
16,410,934-a686-4dbd-9086-bc060135f0b4 16 0 1 0 11 4 4 0 2 High
6c728891–8924-4a51-b3ed-f4b83d6c8de4 16 1 2 2 7 3 1 0 0 High
4da83354–4512-4dca-af59-dc8217363511 16 0 0 1 3 1 2 2 0 High
09bb6311-41ad-46a1–8195-6d1fdacd7cb0 a 16 0 4 0 0 0 0 0 0 High
ebb062c0-ea5b-48f6-aeee-2674b6dabdeca,b 16 2 1 2 0 0 0 0 0 Med
dcceaf54-0bce-4650-9980-9843abce0c41a 16 2 0 0 0 0 0 0 0 Med
f9160e70-27f0-4c8c-a667-b24195ad659c 16 0 2 0 0 0 0 0 0 Med
563e009c-c93d-46 cm3-867d-f5c89d9336d9 48 0 0 2 0 0   0 0 Med
1b59308e-48 cm3-4bd9-b990-c82154487522 4 0 0 2 0 0   0 0 Med
4cd7f57c-fd19-4def-a5fb-dca3dbc10320 16 1 3 2 5 4 0 0 0 Low
53ebd660-7f5d-433a-acb7-4153f36484d0 18 1 1 0 0 0 0 0 0 Low
aa0e444b-c913-4a70-a76d-be70ccf80691 96 0 0 0 0 0   1 0 Low
  1. HPV types and genes (E6, E7, E1, E2, E4, E5, L2, L1) identified by Next Generation Sequencing. 0 indicates no reads. Of the 17 HPV 16/18 positive prostate cancer samples 14 (82%) had reads for the E7 gene
  2. amarks TGCA specimens with HPV reads from Tang et al. 2013
  3. bmarks normal tissue. Confidence is marked at high (both quality filters), Med (one quality filter), Low (no quality filters)