Whole-genome analysis of human papillomavirus genotypes 52 and 58 isolated from Japanese women with cervical intraepithelial neoplasia and invasive cervical cancer

Tenjimbayashi, Yuri; Onuki, Mamiko; Hirose, Yusuke; Mori, Seiichiro; Ishii, Yoshiyuki; Takeuchi, Takamasa; Tasaka, Nobutaka; Satoh, Toyomi; Morisada, Tohru; Iwata, Takashi; Miyamoto, Shingo; Matsumoto, Koji; Sekizawa, Akihiko; Kukimoto, Iwao

doi:10.1186/s13027-017-0155-4

Table 1 HPV52/58 genomes obtained in this study

From: Whole-genome analysis of human papillomavirus genotypes 52 and 58 isolated from Japanese women with cervical intraepithelial neoplasia and invasive cervical cancer

	ID	Histology	HPV type	Age	Length (bp)	Lineage	Accession No.
HPV52	#001	CIN1	52	65	7960	B2	LC270024
	#002	CIN1	52	50	7960	B2	LC270025
	#003	CIN1	52	30	7960	B2	LC270026
	#004	CIN1	51/52	31	7960	B2	LC270027
	#005	CIN1	52/56	24	7960	B2	LC270028
	#006	CIN1	52	47	7960	B2	LC270029
	#007	CIN1	33/52/69	31	7960	B2	LC270030
	#008	CIN1	45/52/53	31	7960	B2	LC270031
	#009	CIN1	16/42/52/53	41	7960	B2	LC270032
	#010	CIN1	52	40	7960	B2	LC270033
	#011	CIN1	42/52/58	23	7960	B2	LC270034
	#012	CIN1	52	64	7960	B2	LC270035
	#013	CIN1	35/52	40	7960	B2	LC270036
	#014	CIN1	52	48	7960	B2	LC270037
	#015	CIN1	52	45	7960	B2	LC270038
	#016	CIN1	52/82	24	7982^**	B2	LC270039
	#017	CIN1	45/52	31	7960	B2	LC270040
	#018	CIN1	31/52	30	7960	B2	LC270041
	#019	CIN1	52	37	7960	B2	LC270042
	#020	CIN1	33/52	40	7960	B2	LC270043
	#021	CIN2	16/52	31	7960	B2	LC270044
	#022	CIN2	52	36	7960	B2	LC270045
	#023	CIN2	52	28	7960	B2	LC270046
	#024	CIN2	52	41	7960	B2	LC270047
	#025	CIN2	52	39	7960	B2	LC270048
	#026	CIN2	52	53	7960	B2	LC270049
	#027	CIN2	52	30	7960	B2	LC270050
	#028	CIN2	52	40	7960	B2	LC270051
	#029	CIN2	52/58	40	7960	B2	LC270052
	#030	CIN2	52	37	7960	B2	LC270053
	#031	CIN2	52	33	7960	B2	LC270054
	#032	CIN3	18/52/58	36	7960	B2	LC270055
	#033	CIN3	52	42	7960	B2	LC270056
	#034	CIN3	52	48	7960	B2	LC270057
	#035	CIN3	39/52/82	30	7960	B2	LC270058
	#036	CIN3	52	31	7937	A1	LC270059
	#037	CIN3	52	37	7960	B2	LC270060
	#038	CIN3	52	33	7903^*	B2	LC270061
	#039	CIN3	52	49	7960	B2	LC270062
	#040	CIN3	52	36	7937	A1	LC270063
	#041	CIN3	52	61	7960	B2	LC270064
	#042	ICC (SCC)	52	44	7924^*	B2	LC270065
	#043	ICC (SCC)	33/39/52	54	7921^*	B2	LC270066
	#044	ICC (SCC)	52	70	7960	B2	LC270067
	#045	ICC (SCC)	52	68	7960	B2	LC270068
	#046	ICC (Ad)	16/18/52	44	7960	B2	LC270069
	#047	ICC (SCC)	52	74	7960	B2	LC270070
	#048	ICC (SCC)	16/52	47	7960	B2	LC270071
	#049	ICC (SCC)	6/16/52	31	7960	B2	LC270072
	#050	ICC (SCC)	52	76	7960	B2	LC270073
	#051	ICC (SCC)	52	76	7960	B2	LC270074
	#052	ICC (SCC)	52	67	7960	B2	LC270075
HPV58	#053	CIN1	42/58	32	7824	A2	LC270076
	#054	CIN1	58	35	7824	A1	LC270077
	#055	CIN1	58	43	7824	A1	LC270078
	#056	CIN1	58	35	7824	A2	LC270079
	#057	CIN1	58	31	7824	A2	LC270080
	#058	CIN1	16/58/82	27	7824	A1	LC270081
	#059	CIN1	58	36	7824	A2	LC270082
	#060	CIN1	58	48	7836	A3	LC270083
	#061	CIN1	58	34	7824	A1	LC270084
	#062	CIN1	42/52/58	23	7824	A1	LC270085
	#063	CIN1	58	54	7814^***	A2	LC270086
	#064	CIN1	58	31	7824	A2	LC270087
	#065	CIN1	58/68	44	7824	A1	LC270088
	#066	CIN1	58/68	44	7824	A2	LC270089
	#067	CIN1	58	30	7824	A2	LC270090
	#068	CIN1	58	39	7824	A1	LC270091
	#069	CIN1	58	36	7824	A2	LC270092
	#070	CIN1	16/31/52/58/66	33	7836	A3	LC270093
	#071	CIN1	58	39	7824	A1	LC270094
	#072	CIN1	52/58	34	7824	A2	LC270095
	#073	CIN1	58	27	7824	A1	LC270096
	#074	CIN2	16/52/58	45	7824	A2	LC270097
	#075	CIN2	18/52/58	36	7824	A1	LC270098
	#076	CIN2	53/58/84	23	7824	A1	LC270099
	#077	CIN2	58	45	7824	A2	LC270100
	#078	CIN2	58	32	7824	A1	LC270101
	#079	CIN2	58	56	7823	A2	LC270102
	#080	CIN2	58	45	7823	A1	LC270103
	#081	CIN2	58	38	7824	A2	LC270104
	#082	CIN2	58	40	7820	C	LC270105
	#083	CIN2	58	32	7824	A1	LC270106
	#084	CIN2	58	33	7824	A2	LC270107
	#085	CIN2	58	40	7824	A2	LC270108
	#086	CIN3	58	29	7824	A2	LC270109
	#087	CIN3	58	38	7836	A3	LC270110
	#088	CIN3	58	35	7824	A2	LC270111
	#089	CIN3	58	39	7824	A2	LC270112
	#090	CIN3	58	37	7824	A1	LC270113
	#091	CIN3	58	27	7824	A2	LC270114
	#092	CIN3	58	34	7824	A1	LC270115
	#093	ICC (SCC)	58	77	7824	A2	LC270116
	#094	ICC (Ad)	16/53/58	39	7836	A3	LC270117
	#095	ICC (SCC)	58	79	7824	A2	LC270118
	#096	ICC (SCC)	58	48	7824	A1	LC270119
	#097	ICC (SCC)	58	64	7824	A2	LC270120
	#098	ICC (SCC)	58	54	7824	A1	LC270121
	#099	ICC (SCC)	45/58	36	7824	A2	LC270122
	#100	ICC (SCC)	58	49	7836	A3	LC270123

CIN cervical intraepithelial neoplasia, ICC invasive cervical cancer, SCC squamous cell carcinoma, Ad adenocarcinoma. The following sequences were identical: #001, #022 and #033; #004 and #010; #012 and #027; #007 and #018; #020 and #021; #011, #045, #047, and #048; #066, #067, and #084; #058, #068, #075, and #078. *, E2/E4 deletion; **, L2 insertion; ***, E1 deletion

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ISSN: 1750-9378

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