Fig. 3

Lineage/sublineage-specific SNPs identified from comparisons of whole-genome sequences of the Japanese HPV52/58 isolates and reference HPV52/58 genomes. The positions of specific SNPs for HPV52 lineages A/B/C/D and sublineages B1/B2 (a) and for HPV58 lineages A/B/C/D and sublineages A1/A2/A3 (b) are indicated with colored bars. The genome organization of HPV52/58 is shown below: pE, the early promoter; pL, the late promoter; LCR, the long control region; polyA (early) and polyA (late), the early and late polyadenylation signals, respectively