Genetic variability in E6, E7 and L1 genes of Human Papillomavirus 62 and its prevalence in Mexico

Table 2 HPV genotypes detected in samples from cervical cancer that were positive to HPV62 by NGS

Sample code	HPV types found by Linear Array	HPV types found by NGS	Reads using FAP primers	Reads using PGMY primers	Total Reads
CC-1	16, 54, 62, 70	16	-	174	174
		33	-	1	1
		54	776	3	779
		62	105	-	105
		70	163	348	511
		118	2	-	2
CC-2	16, 18, 62	16	9	481	490
		62	895	3	898
CC-3	39, 62, 71	16	-	50	50
		39	-	2	2
		62	1086	218	1304
		71	-	98	98
		81	2	-	2
CC-5	33	12	21	-	21
		21	1069	-	1069
		33	1	507	508
		62	3	-	3

Reads obtained from each HPV type by using FAP or PGMY11/09 primers are detailed for each sample. Linear Array results are also included

ISSN: 1750-9378