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Table 2 HPV genotypes detected in samples from cervical cancer that were positive to HPV62 by NGS

From: Genetic variability in E6, E7 and L1 genes of Human Papillomavirus 62 and its prevalence in Mexico

Sample code HPV types found by Linear Array HPV types found by NGS Reads using FAP primers Reads using PGMY primers Total Reads
CC-1 16, 54, 62, 70 16 - 174 174
   33 - 1 1
   54 776 3 779
   62 105 - 105
   70 163 348 511
   118 2 - 2
CC-2 16, 18, 62 16 9 481 490
   62 895 3 898
CC-3 39, 62, 71 16 - 50 50
   39 - 2 2
   62 1086 218 1304
   71 - 98 98
   81 2 - 2
CC-5 33 12 21 - 21
   21 1069 - 1069
   33 1 507 508
   62 3 - 3
  1. Reads obtained from each HPV type by using FAP or PGMY11/09 primers are detailed for each sample. Linear Array results are also included