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Table 1 Primer and probes for real time polymerase chain reaction

From: Human papillomavirus infection in anal intraepithelial lesions from HIV infected Cuban men

LCR/E6/E7 regions primers and TaqMan probes

Sequences 5′- 3′

HPV 16 +

5′ gaa ccg aaa ccg gtt agt ata a 3′

HPV 16 -

5′ atg tat agt tgt ttg cag ctc tgt 3′

HPV 16 Probe

5′ cat ttt atg cac caa aag aga act gca atg ttt c 3′

HPV 18 +

5′ gga ccg aaa acg gtg tat ata a 3′

HPV 18 -

5′ cag tga agt gtt cag ttc ggt 3′

HPV 18 Probe

5′ atg tga gaa aca cac cac aat act atg gcg cg 3′

HPV 31 +

5′ gaa ccg aaa acg gtt ggt ata ta 3′

HPV 31 -

5′ atc gta ggg tat ttc caa tgc 3′

HPV 31 Probe

5′ cat agt att ttg tgc aaa cct aca gac gcc atg t 3′

HPV 33 +

5′ gca tga ttt gtg cca agc at 3′

HPV 33 -

5′ ctc aga tcg ttg caa agg ttt 3′

HPV 33 Probe

5′ act ata cac aac att gaa cta cag tgc gtg gaa tgc 3′

HPV 45 +

5′ cag tgt aat aca tgt tgt gac cag 3′

HPV 45 -

5′ aca gga tct aat tca ttc tga ggt 3′

HPV 45 Probe

5′ caa gaa aga ctt cgc aga cgt agg gaa aca c 3′

HPV 58 +

5′ cac gga cat tgc atg att tgt 3′

HPV 58 -

5′ tca gat cgc tgc aaa gtc ttt 3′

HPV 58 Probe

5′ ttt caa ttc gat ttc atg cac 3′

β globin +

5′ aca caa ctg tgt tca cta gc 3′

β globin -

5′ caa ctt cat cca cgt tca cc 3′

β globin Probe

5′ tca aac aga cac cat ggt gca tct gac tcc 3′