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Table 1 Sequences of primers and probes for HPV detection and controls

From: Variability of high risk HPV genotypes among HIV infected women in Mwanza, Tanzania- the need for evaluation of current vaccine effectiveness in developing countries

Name

Sequence

Target

HPV GEN1 PCR

 CP4

5´-ATG GTA CAR TGG GCA TWT GA-3´

HPV E1 (nt 1942-1961)

 CP5

5´-GAG GYT GCA ACC AAA AMT GRC-3´

HPV E1 (nt 2400-2378)

HPV GEN2 PCR

 PPF1

5´-AAC AAT GTG TAG ACA TTA TAA ACG AGC-3´

HPVE1 (nt 2082-2108)

 PPR2

5´-ATT AAA CTC ATT CCA AAA TAT GA-3´

HPVE1 (nt 2336-2314)

  1. Numbering is according to the sequence of HPV16W12E (GenbankIDNr. AF125673)