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Table 2 Primers used for qPCR

From: HIV-1 Tat induces DNMT over-expression through microRNA dysregulation in HIV-related non Hodgkin lymphomas

Gene

Primer sequence

CYCLIN A- FORWARD

5’-AGG CTT CAA AGT ACC TGT GTG-3’

CYCLIN A- REVERSE

5’-TTG ATC CCA CGT GCA GAA G-3’

DNMT1-FORWARD

5’-CGACTACATCAAAGGCAGCAACCTG-3’

DNMT1-REVERSE

5’-TGGAGTGGACTTGTGGGTGTTCTC-3’

DNMT3A-FORWARD

5’-TAT TGA TGA GCG CAC AAG AGA GC-3'

DNMT3A-REVERSE

5’-GGG TGT TCC AGG GTA ACA TTG AG-3'

DNMT3b-FORWARD

5’-GGC AAG TTC TCC GAG GTC TCTG-3'

DNMT3b-REVERSE

5’-TGG TAC ATG GCT TTT CGA TAG GA-3'

RB1 FORWARD

5’-CAC CAA TAC CTC ACA TTC CTC-3'

RB1 REVERSE

5’-TTC TCA GAA GTC CCG AAT G-3’

TP53 FORWARD

5’-CCA TCC TCA CCA TCA TCA C-3'

TP53 REVERSE

5’-GGC AGT GCT CGC TTA GTG G-3'

INK4/p16 FORWARD

5'-GGA AGG TCC CTC AGA CAT C-3'

INK4/p16 REVERSE

5’-GCA GTT GTG GCC CTG TAG-3'

  1. Primers for CYCLIN A amplified a region of 105 bp; Primers for DNMT1 amplified a region of 88 bp; Primers for DNMT3a amplified a region of 68 bp; Primers for DNMT3b amplified a region of 68 bp; Primers for RB1 amplified a region of 152 bp; Primers for TP53 amplified a region of 140 bp; Primers for INK4/p16 amplified a region of 67 bp.