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Table 1 Bioinformatics tools used for prediction

From: The viral transactivator HBx protein exhibits a high potential for regulation via phosphorylation through an evolutionarily conserved mechanism

Name

Technique

Residues

Reference

Website

Phosphorylation

    

NetPhos 2.0

ANN

9-33

[51]

http://cbs.dtu.dk/services/NetPhos

DISPHOS 1.3

LR

25

[52]

http://dabi.temple.edu/disphos

PPRED

PSSM, SVM

7-15

[54]

http://ashiskb.info/reserach/ppred

Phos3D

SVM

13

[53]

http://phos3d.mpimp-golm.mpg.de

Kinases

    

NetPhosK 1.0

ANN

9-33

[55]

http://cbs.dtu.dk/services/NetPhosK

KinasePhos

SVM

9

[56]

http://kinasephos2.mbc.nctu.edu.tw

PPSP

BP

9

[57]

http://ppsp.biocuckoo.org

GPS 2.1

PSSM, GA

3-31

[58]

http://gps.biocuckoo.org

  1. Techniques: ANN: Artificial neural network; LR: Logistic regression; SVM: Support vector machine;
  2. PSSM: Position-specific scoring matrix; BP: Bayesian probability; GA: Genetic algorithm.