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Table 5 Concordance values by techniques and HPV type

From: Performance of the digene LQ, RH and PS HPVs genotyping systems on clinical samples and comparison with HC2 and PCR-based Linear Array

GENOTYPE LA vs. LQ/RH LQ RH LA vs. PS PS
  (n) (n) kappa (95% CI) McNemar's
p-value
(n) kappa (95% CI) McNemar's
p-value
(n) (n) kappa (95% CI) McNemar's
p-value
HPV 16 90 93 0.898 (0.845 - 0.952) 0.581 91 0.898 (0.844 - 0.952) 1.000 90 73 0.825 (0.753 - 0.896) 0.000
HPV 16 SI 36 51 0.720 (0.608 - 0.832) 0.001 60 0.658 (0.543 - 0.772) 0.000 81 69 0.806 (0.728 - 0.883) 0.017
HPV 16 MI 54 42 0.581 (0.455 - 0.707) 0.058 31 0.473 (0.335 - 0.611) 0.000 9 4 0.452 (0.114 - 0.790) 0.125
HPV 18 20 25 0.736 (0.588 - 0.885) 0.227 22 0.795 (0.658 - 0.933) 0.727 20 14 0.751 (0.586 - 0.916) 0.070
HPV 18 SI 5 8 0.607 (0.292 - 0.923) 0.375 9 0.562 (0.249 - 0.876) 0.219 13 12 0.708 (0.502 - 0.914) 1.000
HPV 18 MI 15 17 0.538 (0.324 - 0.752) 0.791 13 0.626 (0.412 - .840) 0.754 7 2 0.439 (0.035 - 0.842) 0.063
HPV 45 9 11 0.897 (0.754 - 1.000) 0.500 9 0.886 (0.728 - 1.000) 1.000 9 8 0.818 (0.617 - 1.000) 1.000
HPV45 SI 5 6 0.907 (0.727 - 1.000) 1.000 5 1.00 (1.000 - 1.000) 1.000 7 6 0.921 (0.768 - 1.000) 1.000
HPV 45 MI 4 5 0.662 (0.302 - 1.000) 1.000 4 0.747 (0.408 - 1.000) 1.000 2 2 0.497 (0.000 - 1.000) 1.000
HPV 31 41 39 0.885 (0.806 - 0.963) 0.727 36 0.837 (0.742 - 0.931) 0.227     
HPV 58 36 26 0.821 (0.714 - 0.928) 0.020 23 0.757 (0.632 - 0.882) 0.000     
HPV 51 34 28 0.785 (0.667 - 0.902) 0.146 21 0.702 (0.561 - 0.843) 0.001     
HPV 52 33 21 0.474 (0.304 - 0.645) 0.029 21 0.515 (0.347 - 0.683) 0.023     
HPV 66 28 27 0.820 (0.706 - 0.935) 1.000 23 0.808 (0.686 - 0.930) 0.180     
HPV 53 28 11 0.486 (0.293 - 0.679) 0.000 8 0.421 (0.221 - 0.621 0.000     
HPV 39 25 17 0.796 (0.659 - 0.933) 0.008 17 0.745 (0.594 - 0.896) 0.021     
HPV 33 21 22 0.825 (0.698 - 0.952) 1.000 20 0.869 (0.756 - 0.982) 1.000     
HPV 56 21 29 0.739 (0.599 - 0.880) 0.039 28 0.756 (0.618 - 0.894) 0.065     
HPV 59 20 10 0.651 (0.452 - 0.851) 0.002 10 0.651 (0.452 - 0.851) 0.002     
HPV 35 12 11 0.955 (0.866 - 1.000) 1.000 9 0.852 (0.688 - 1.000) 0.250     
HPV 68 10 9 0.620 (0.360 - 0.879) 1.000 10 0.586 (0.326 - 0.847) 1.000     
HPV 73 9 4 0.608 (0.295 - 0.922) 0.063 2 0.357 (0.000 - 0.717) 0.016     
HPV 82 4 6 0.594 (0.231 - 0.956) 0.625 6 0.797 (0.522 - 1.000) 0.500     
HPV 26 2 2 0.497 (0.000 - 1.000) 1.000 1 0.665 (0.048 - 1.000) 1.000     
  1. "n": Number of cases HPV type-specific positive; "CI": Confidence interval.