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Table 2 E6-2 amplicon sequences

From: Human papillomavirus type 16 variants in cervical intraepithelial neoplasia and invasive carcinoma in San Luis Potosí City, Mexico

 

Characteristics of the nucleotide sequences

Cervical sample

Accession number a

Length (bp)

HPV16 subtype

Variant b

Novel change a

HPV16-1

EU880235

521

AA

AA-a

---

HPV16-2

EU880236

573

AA

AA-a

---

HPV16-3

EU880237

537

E

E-T350G

---

HPV16-4

EU880238

560

E

E-T350G

---

HPV16-5

EU880239

539

E

E-T350G

---

HPV16-6

EU880240

576

E

E-T350G

---

HPV16-7

EU880241

562

E

E-T350G

---

HPV16-8

EU880242

493

E

E-T350G

---

HPV16-9

EU880243

436

E

E-T350G

---

HPV16-10

EU880244

539

E

E-C188G

---

HPV16-11

EU880245

545

E

E-C188G

---

HPV16-12

EU880246

562

E

E-P

---

HPV16-13

EU880247

573

E

E-P

A334G

HPV16-14

EU880248

562

E

E-P

A334G

HPV16-15

EU880249

562

E

E-P

A334G

HPV16-16

EU880250

544

E

E-P

A334G

HPV16-17

EU880251

564

E

E-P

A334G

HPV16-18

EU880252

541

E

E-P

A334G

HPV16-19

EU880253

541

E

E-P

---

HPV16-20

EU880254

548

E

E-P

A334G

HPV16-21

EU880255

465

E

E-P

A334G

HPV16-22

EU880256

545

E

E-P

A334G

HPV16-23

EU880257

522

E

E-P

A334G

HPV16-24

EU880258

522

E

E-P

A334G

HPV16-25

EU880259

564

E

E-P

A334G

HPV16-26

EU880260

560

E

E-P

A334G

HPV16-27

EU880261

337

E

E-P

A334G

HPV16-28

EU880262

576

E

E-P

A334G

HPV16-29

EU880263

546

E

E-P

A334G

HPV16-30

EU880264

564

E

E-P

A404T

HPV16-31

EU880265

564

E

E-P

---

HPV16-32

EU880266

563

E

E-P

---

HPV16-33

EU880267

558

E

E-P

A334G

HPV16-34

EU880268

561

E

E-P

A334G

HPV16-35

EU880269

562

E

E-P

A334G

HPV16-36

EU880270

562

E

E-P

A334G

HPV16-37

EU880271

559

E

E-P

A334G

HPV16-38

EU880272

564

E

E-P

A334G

  1. a GenBank/EMBL/DDBJ.
  2. b Nucleotide numbering of the HPV16 E-P Ref genome.
  3. c Described for the first time in this work.