Skip to main content

Table 2 Sequences of the primers and probes used for real-time quantitative PCR analysis

From: Prevalence of human cytomegalovirus, polyomaviruses, and oncogenic viruses in glioblastoma among Japanese subjects

Target

Sequence (5′ → 3′)

Reference

HCMV

gB

F

GGCGAGGACAACGAAATCC

[21]

  

R

TGAGGCTGGGAAGCTGACAT

  

probe

FAM-TTGGGCAACCACCGCACTGAGG-TAMRA

 

IE

F

GACTAGTGTGATGCTGGCCAAG

[22]

  

R

GCTACAATAGCCTCTTCCTCATCTG

  

probe

FAM-AGCCTGAGGTTATCAGTGTAATGAAGCGCC-TAMRA

MCPyV

ST

F

GCAAAAAAACTGTCTGACGTGG

[40]

  

R

CCACCAGTCAAAACTTTCCCA

  

probe

FAM-TATCAGTGCTTTATTCTTTGGTTTGGATTTC-TAMRA

HPyV6

LT

F

TGGTCCCCTTTTGTAACAGC

[41]

  

R

GCCAGAATTGCCAGAGGATA

  

probe

FAM-TGCAAACATGGCTTATGCAGAAA-TAMRA

HPyV7

LT

F

ACTGGTTCCCACCAAATGAG

[41]

  

R

TGCATAAACCAGGCCTTAAAA

  

probe

FAM-CACCCTTTTTGCAAAAGCCTTT-TAMRA

HPyV9

VP1

F

TGCTGTTGATATTGTTGGAATTCA

[42]

  

R

AACAACCCGTTTCCTTAGAGTTACA

  

probe

FAM-CTGGAGAGGCCTACCT-NFQ-MGB

EBV

LMP1

F

GTTGATCTCCTTTGGCTCCTC

[43]

  

R

GTGTCTGCCCTCGTTGG

  

probe

FAM-TTGTTGAGGGTGCGGGAGGGAGTCATCGTGG-TAMRA

HPV16

E6

F

AGGACCCACAGGAGCGAC

[44]

  

R

AGTCATATACCTCACGTCGCAGT

  

probe

FAM-ATGCACAGAGCTGCAAACAA-TAMRA

HPV18

L1

F

GGTTCAGGCTGGATTGCG

[44]

  

R

TACACGCACACGCTTGGC

  

probe

FAM-TCGCAAACGTTCTGCTCC-TAMRA

HHV8

ORF26

F

AGCCGAAAGGATTCCACCAT

[45]

  

R

TCCGTGTTGTCTACGTCCAG

  

probe

FAM-TGCAGCAGCTGTTGGTGTACCACAT-TAMRA

RNase P

 

F

AGATTTGGACCTGCGAGCG

[40]

  

R

GAGCGGCTGTCTCCACAAGT

  

probe

FAM-TTCTGACCTGAAGGCTCTGCGCG-TAMRA