Table 4 HPV sequences in CRC and adjacent tissues according to PCR protocols and NGS analysis
From: Evaluation of human papillomavirus DNA in colorectal cancer and adjacent mucosal tissue samples
Species | HPV type | Adjacent CRC | CRC | ||||
|---|---|---|---|---|---|---|---|
Number of reads | |||||||
PCR protocol FAP59/64 | PCR protocol FAPM1 | PCR protocol CUT | PCR protocol FAP59/64 | PCR protocol FAPM1 | PCR protocol CUT | ||
Alpha-3 | HPV89 | – | – | 2 | – | – | – |
Alpha-7 | HPV18 | 2 | – | – | – | – | – |
Alpha-7 | HPV39 | – | – | 2 | – | – | – |
Alpha-7 | HPV68 | – | – | – | 1815 | – | – |
Alpha-7 | HPV70 | – | 391 | – | – | – | – |
Alpha-10 | HPV11 | – | – | – | – | – | 2 |
Beta-HPV | HPV-mm292c14 | 876 | – | – | – | – | – |
Beta-1 | HPV105 | – | – | – | – | – | 2 |
Beta-1 | HPV124 | – | 89 | – | – | – | – |
Beta-1 | HPV20 | – | – | – | 647 | – | – |
Beta-1 | HPV24 | – | – | – | 3843 | – | – |
Beta-1 | HPV93 | 10,014 | – | – | – | – | – |
Beta-1 | HPV98 | – | – | – | 39 | – | – |
Beta-2 | HPV23 | – | 8 | – | – | – | – |
Beta-3 | HPV49 | – | 107 | – | – | – | – |
Gamma-HPV | HPV-mDysk3 | – | – | 2 | – | – | – |
Gamma-HPV | HPV-mSK245 | – | – | – | 995 | – | – |
Gamma-HPV | HPV205 | – | 57 | – | – | – | – |