Skip to main content

Table 4 List of microbial infection terms seen activated across populations

From: Global comparative transcriptomes uncover novel and population-specific gene expression in esophageal squamous cell carcinoma

Microbial infection terms

Normalized Enrichment score

Adjusted P-value

Genes

Population

Human papillomavirus infection

0.49

7.1E-04

COL1A2, COL4A1, COL4A2, COL6A3, CREB5, FN1, FZD2, HEY1, ISG15, LAMC2, PTGS2, SPP1, TNC

African American

Human papillomavirus infection

0.56

5.1E-05

AKT3, CCNA1, COL1A1, COL1A2, FN1, HEY1, ITGA5, ITGA6, LAMB3, LAMC1, LAMC2, PTGS2, SPP1, THBS1, TNC

Brazilian

Human papillomavirus infection

0.40

1.28E-05

CCNA1, COL1A2, COL4A1, COL4A2, COL4A6, COL6A3, COL9A3, FN1, FZD2, HES4, HEY1, ISG15, ITGA3, ITGA5, LAMB3, LAMC1, LAMC2, PTGS2, RELN, SPP1, THBS1, THBS2, THBS4, TNC

European

Amoebiasis

0.56

4.7E-04

COL1A2, COL3A1, COL4A1, COL4A2, CXCL1, CXCL8, FN1, IL6, LAMC2, PLCB4

African American

Amoebiasis

0.49

0.047

COL1A1, COL1A2, COL3A1, CXCL1, FN1, IL1B, LAMB3, LAMC1, LAMC2

Brazilian

Human cytomegalovirus infection

0.68

0.030

AKT3, CCL2, CCR1, GNA12, IL1B, PTGS2

Brazilian

Leishmaniasis

0.79

5.2E-03

C3, FCGR2A, FCGR3A, IL1B, PTGS2

Brazilian