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Table 3 List of 19 DEGs with discordant expression between populations

From: Global comparative transcriptomes uncover novel and population-specific gene expression in esophageal squamous cell carcinoma

Gene

Population (Evidence from ESCC ATLAS)

Log2FC

Adj. P-value

Gene

Population (Evidence from ESCC ATLAS)

Log2FC

Adj. P-value

FHL1

African American

 1.68

1.86E-02

TCEAL2

European

1.7

4.91E-02

FHL1

Brazilian

1.55

1.23E-04

TCEAL2

Taiwanese

− 2.11

1.04E-02

FHL1

European

1.51

3.16E-02

CNN1

European

2.01

1.20E-02

FHL1

Taiwanese (South Indian, Chinese)

− 1.69

1.10E-02

CNN1

Taiwanese (South Indian, Chinese)

− 2.95

2.25E-05

TPPP3

African American

3.32

4.64E-02

SYNM

European

1.56

1.83E-03

TPPP3

Chinese

− 1.5

5.92E-13

SYNM

Taiwanese (South Indian)

− 2.41

5.21E-04

IGSF22

African American

1.81

1.02E-03

PLN

European

2.31

1.10E-02

IGSF22

European

− 1.88

3.55E-03

PLN

Taiwanese (South Indian)

− 1.91

2.22E-02

KCND1

African American

− 1.78

3.12E-02

LYZ

Brazilian (Chinese)

1.68

5.76E-05

KCND1

European

2.01

5.35E-03

LYZ

European

− 2.09

2.57E-02

SMPX

African American

− 1.84

2.82E-02

ACTG2

Brazilian

1.51

1.90E-02

SMPX

European

1.61

1.78E-02

ACTG2

Taiwanese (South Indian)

− 2.5

1.01E-05

TPTE2P1

African American

− 1.6

1.69E-02

RBPMS2

European

1.82

4.69E-02

TPTE2P1

European

1.96

1.72E-03

RBPMS2

Taiwanese

− 1.77

1.55E-02

IL36G

African American (South Indian)

2.6

4.20E-02

FGF3

European

2.03

1.50E-02

IL36G

European

− 2.77

1.44E-02

FGF3

Taiwanese

− 1.7

4.32E-03

PCP4

European

2.16

4.35E-02

KIF26B

European (South Indian)

2.1

3.82E-05

PCP4

Taiwanese

− 2.52

1.36E-04

KIF26B

Taiwanese

− 1.86

2.35E-05

MYL9

European

1.61

2.10E-02

MYH11

European

1.93

7.33E-03

MYL9

Taiwanese (South Indian)

− 1.75 

9.96E-03

MYH11

Taiwanese (Chinese)

− 2.91

7.20E-05

  1. This table presents a list of 19 differentially expressed genes (DEGs) that exhibit discordant expression patterns between populations. It also includes evidence for the observed gene expression direction from the ESCC ATLAS